J4_9YDC_006
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|A|G|2130
9YDC|1|A|A|2131
9YDC|1|A|C|2132
9YDC|1|A|U|2133
9YDC|1|A|G|2134
*
9YDC|1|A|C|2146
9YDC|1|A|A|2147
9YDC|1|A|U|2148
9YDC|1|A|A|2149
9YDC|1|A|G|2150
*
9YDC|1|A|U|2186
9YDC|1|A|G|2187
9YDC|1|A|A|2188
9YDC|1|A|U|2189
9YDC|1|A|U|2190
*
9YDC|1|A|A|2317
9YDC|1|A|U|2318
9YDC|1|A|U|2319
9YDC|1|A|A|2320
9YDC|1|A|A|2321
9YDC|1|A|C|2322
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain Lp
- 60S ribosomal protein L41-A
- Chain Lr
- 60S ribosomal protein L43-A
Coloring options: