J4_9YDC_013

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CGUGAC*GCGCAG*UGAUGUCCU*AGCG

Length

25 nucleotides

Bulged bases

9YDC|1|n|U|8, 9YDC|1|n|U|47, 9YDC|1|n|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|n|C|6
9YDC|1|n|G|7
9YDC|1|n|U|8
9YDC|1|n|G|9
9YDC|1|n|A|10
9YDC|1|n|C|11
*
9YDC|1|n|G|24
9YDC|1|n|C|25
9YDC|1|n|G|26
9YDC|1|n|C|27
9YDC|1|n|A|28
9YDC|1|n|G|29
*
9YDC|1|n|U|42
9YDC|1|n|G|43
9YDC|1|n|A|44
9YDC|1|n|U|45
9YDC|1|n|G|46
9YDC|1|n|U|47
9YDC|1|n|C|48
9YDC|1|n|C|49
9YDC|1|n|U|50
*
9YDC|1|n|A|64
9YDC|1|n|G|65
9YDC|1|n|C|66
9YDC|1|n|G|67

Current chains

Chain n

P site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain E

Small subunit ribosomal RNA; SSU rRNA

Chain Lq

60S ribosomal protein L42-A

Chain SH

40S ribosomal protein S18-A