J4_9YDE_001
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 9YDE|1|A|U|298
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDE|1|A|U|112
9YDE|1|A|C|113
*
9YDE|1|A|G|267
9YDE|1|A|A|268
9YDE|1|A|G|269
9YDE|1|A|U|270
9YDE|1|A|C|271
9YDE|1|A|G|272
*
9YDE|1|A|C|293
9YDE|1|A|U|294
9YDE|1|A|A|295
9YDE|1|A|A|296
9YDE|1|A|G|297
9YDE|1|A|U|298
9YDE|1|A|G|299
*
9YDE|1|A|U|316
9YDE|1|A|A|317
9YDE|1|A|A|318
9YDE|1|A|A|319
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
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