J4_9YPG_004

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YPG|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|C|111
9YPG|1|5|C|112
*
9YPG|1|5|G|278
9YPG|1|5|A|279
9YPG|1|5|G|280
9YPG|1|5|U|281
9YPG|1|5|C|282
9YPG|1|5|G|283
*
9YPG|1|5|C|304
9YPG|1|5|A|305
9YPG|1|5|A|306
9YPG|1|5|A|307
9YPG|1|5|G|308
9YPG|1|5|C|309
9YPG|1|5|G|310
*
9YPG|1|5|U|327
9YPG|1|5|A|328
9YPG|1|5|A|329
9YPG|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36