J4_9YPO_004

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YPO|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|111
9YPO|1|5|C|112
*
9YPO|1|5|G|278
9YPO|1|5|A|279
9YPO|1|5|G|280
9YPO|1|5|U|281
9YPO|1|5|C|282
9YPO|1|5|G|283
*
9YPO|1|5|C|304
9YPO|1|5|A|305
9YPO|1|5|A|306
9YPO|1|5|A|307
9YPO|1|5|G|308
9YPO|1|5|C|309
9YPO|1|5|G|310
*
9YPO|1|5|U|327
9YPO|1|5|A|328
9YPO|1|5|A|329
9YPO|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36