J4_9YPO_008

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9YPO|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|G|2618
9YPO|1|5|G|2619
*
9YPO|1|5|U|2637
9YPO|1|5|G|2638
9YPO|1|5|U|2639
9YPO|1|5|G|2640
9YPO|1|5|A|2641
9YPO|1|5|A|2642
*
9YPO|1|5|U|2692
9YPO|1|5|G|2693
9YPO|1|5|G|2694
9YPO|1|5|A|2695
9YPO|1|5|A|2696
9YPO|1|5|A|2697
9YPO|1|5|G|2698
*
9YPO|1|5|U|2718
9YPO|1|5|C|2719

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

eL22

Chain g

Large ribosomal subunit protein eL34

Chain k

eL38