J4_9YPS_004

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YPS|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|C|111
9YPS|1|5|C|112
*
9YPS|1|5|G|278
9YPS|1|5|A|279
9YPS|1|5|G|280
9YPS|1|5|U|281
9YPS|1|5|C|282
9YPS|1|5|G|283
*
9YPS|1|5|C|304
9YPS|1|5|A|305
9YPS|1|5|A|306
9YPS|1|5|A|307
9YPS|1|5|G|308
9YPS|1|5|C|309
9YPS|1|5|G|310
*
9YPS|1|5|U|327
9YPS|1|5|A|328
9YPS|1|5|A|329
9YPS|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36