J4_9YPS_005

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9YPS|1|5|C|216, 9YPS|1|5|C|217, 9YPS|1|5|A|218, 9YPS|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|C|196
9YPS|1|5|A|197
9YPS|1|5|A|198
9YPS|1|5|G|199
*
9YPS|1|5|C|215
9YPS|1|5|C|216
9YPS|1|5|C|217
9YPS|1|5|A|218
9YPS|1|5|G|219
9YPS|1|5|C|220
9YPS|1|5|C|221
9YPS|1|5|C|222
*
9YPS|1|5|G|226
9YPS|1|5|A|227
9YPS|1|5|C|228
*
9YPS|1|5|G|240
9YPS|1|5|G|241
9YPS|1|5|U|242
9YPS|1|5|A|243
9YPS|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24