J4_9YPT_003
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9YPT|1|13|U|9, 9YPT|1|13|U|47, 9YPT|1|13|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YPT_003 not in the Motif Atlas
- Homologous match to J4_6UFH_001
- Geometric discrepancy: 0.1884
- The information below is about J4_6UFH_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9YPT|1|13|G|8
9YPT|1|13|U|9
9YPT|1|13|G|10
9YPT|1|13|G|11
*
9YPT|1|13|U|25
9YPT|1|13|G|26
9YPT|1|13|C|27
*
9YPT|1|13|G|43
9YPT|1|13|A|44
9YPT|1|13|G|45
9YPT|1|13|G|46
9YPT|1|13|U|47
9YPT|1|13|C|48
9YPT|1|13|G|49
*
9YPT|1|13|C|65
9YPT|1|13|C|66
Current chains
- Chain 13
- Met-tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- 60S ribosomal protein L10
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