J4_9YPT_004

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YPT|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|C|111
9YPT|1|5|C|112
*
9YPT|1|5|G|278
9YPT|1|5|A|279
9YPT|1|5|G|280
9YPT|1|5|U|281
9YPT|1|5|C|282
9YPT|1|5|G|283
*
9YPT|1|5|C|304
9YPT|1|5|A|305
9YPT|1|5|A|306
9YPT|1|5|A|307
9YPT|1|5|G|308
9YPT|1|5|C|309
9YPT|1|5|G|310
*
9YPT|1|5|U|327
9YPT|1|5|A|328
9YPT|1|5|A|329
9YPT|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36