J4_9YPT_005

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9YPT|1|5|C|216, 9YPT|1|5|C|217, 9YPT|1|5|A|218, 9YPT|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|C|196
9YPT|1|5|A|197
9YPT|1|5|A|198
9YPT|1|5|G|199
*
9YPT|1|5|C|215
9YPT|1|5|C|216
9YPT|1|5|C|217
9YPT|1|5|A|218
9YPT|1|5|G|219
9YPT|1|5|C|220
9YPT|1|5|C|221
9YPT|1|5|C|222
*
9YPT|1|5|G|226
9YPT|1|5|A|227
9YPT|1|5|C|228
*
9YPT|1|5|G|240
9YPT|1|5|G|241
9YPT|1|5|U|242
9YPT|1|5|A|243
9YPT|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24