J4_9YPV_004

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YPV|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|C|111
9YPV|1|5|C|112
*
9YPV|1|5|G|278
9YPV|1|5|A|279
9YPV|1|5|G|280
9YPV|1|5|U|281
9YPV|1|5|C|282
9YPV|1|5|G|283
*
9YPV|1|5|C|304
9YPV|1|5|A|305
9YPV|1|5|A|306
9YPV|1|5|A|307
9YPV|1|5|G|308
9YPV|1|5|C|309
9YPV|1|5|G|310
*
9YPV|1|5|U|327
9YPV|1|5|A|328
9YPV|1|5|A|329
9YPV|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36