J4_9YPV_011

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

9YPV|1|5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|C|4231
9YPV|1|5|U|4232
9YPV|1|5|A|4233
9YPV|1|5|A|4234
9YPV|1|5|G|4235
*
9YPV|1|5|U|4289
9YPV|1|5|U|4290
9YPV|1|5|G|4291
*
9YPV|1|5|C|4318
9YPV|1|5|C|4319
*
9YPV|1|5|G|4328
9YPV|1|5|G|4329
9YPV|1|5|G|4330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18

Chain T

eL21

Chain o

Large ribosomal subunit protein eL42