J4_9YPW_004

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YPW|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|C|111
9YPW|1|5|C|112
*
9YPW|1|5|G|278
9YPW|1|5|A|279
9YPW|1|5|G|280
9YPW|1|5|U|281
9YPW|1|5|C|282
9YPW|1|5|G|283
*
9YPW|1|5|C|304
9YPW|1|5|A|305
9YPW|1|5|A|306
9YPW|1|5|A|307
9YPW|1|5|G|308
9YPW|1|5|C|309
9YPW|1|5|G|310
*
9YPW|1|5|U|327
9YPW|1|5|A|328
9YPW|1|5|A|329
9YPW|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36