J4_9YPW_014

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

9YPW|1|9|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|9|C|98
9YPW|1|9|A|99
9YPW|1|9|U|100
9YPW|1|9|U|101
9YPW|1|9|A|102
9YPW|1|9|A|103
9YPW|1|9|A|104
9YPW|1|9|U|105
9YPW|1|9|C|106
*
9YPW|1|9|G|355
9YPW|1|9|C|356
9YPW|1|9|C|357
*
9YPW|1|9|G|405
9YPW|1|9|U|406
9YPW|1|9|G|407
9YPW|1|9|A|408
9YPW|1|9|C|409
*
9YPW|1|9|G|431
9YPW|1|9|G|432

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11

Chain XX

uS12