J4_9YPY_006
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CC*GAGGGAG*UGCGCCGCGCU*GCGCACGGGG
- Length
- 30 nucleotides
- Bulged bases
- 9YPY|1|5|G|959, 9YPY|1|5|C|972, 9YPY|1|5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPY|1|5|C|712
9YPY|1|5|C|713
*
9YPY|1|5|G|955
9YPY|1|5|A|956
9YPY|1|5|G|957
9YPY|1|5|G|958
9YPY|1|5|G|959
9YPY|1|5|A|960
9YPY|1|5|G|961
*
9YPY|1|5|U|971
9YPY|1|5|G|971|||A
9YPY|1|5|C|972
9YPY|1|5|G|973
9YPY|1|5|C|974
9YPY|1|5|C|975
9YPY|1|5|G|976
9YPY|1|5|C|977
9YPY|1|5|G|978
9YPY|1|5|C|979
9YPY|1|5|U|980
*
9YPY|1|5|G|1275
9YPY|1|5|C|1276
9YPY|1|5|G|1277
9YPY|1|5|C|1278
9YPY|1|5|A|1279
9YPY|1|5|C|1280
9YPY|1|5|G|1281
9YPY|1|5|G|1282
9YPY|1|5|G|1283
9YPY|1|5|G|1284
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain K
- 60S ribosomal protein L7
- Chain e
- Ribosomal protein L32
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