J4_9YPZ_003
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 9YPZ|1|5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9YPZ_003 not in the Motif Atlas
- Homologous match to J4_8GLP_001
- Geometric discrepancy: 0.0738
- The information below is about J4_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.3
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9YPZ|1|5|C|111
9YPZ|1|5|C|112
*
9YPZ|1|5|G|278
9YPZ|1|5|A|279
9YPZ|1|5|G|280
9YPZ|1|5|U|281
9YPZ|1|5|C|282
9YPZ|1|5|G|283
*
9YPZ|1|5|C|304
9YPZ|1|5|A|305
9YPZ|1|5|A|306
9YPZ|1|5|A|307
9YPZ|1|5|G|308
9YPZ|1|5|C|309
9YPZ|1|5|G|310
*
9YPZ|1|5|U|327
9YPZ|1|5|A|328
9YPZ|1|5|A|329
9YPZ|1|5|G|330
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- eL35
- Chain i
- 60S ribosomal protein L36
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