J4_9YPZ_008
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|5|G|3634
9YPZ|1|5|A|3635
9YPZ|1|5|C|3636
9YPZ|1|5|U|3637
9YPZ|1|5|G|3638
*
9YPZ|1|5|C|3650
9YPZ|1|5|A|3651
9YPZ|1|5|A|3652
9YPZ|1|5|A|3653
9YPZ|1|5|G|3654
*
9YPZ|1|5|U|3690
9YPZ|1|5|G|3691
9YPZ|1|5|A|3692
9YPZ|1|5|U|3693
9YPZ|1|5|U|3694
*
9YPZ|1|5|A|3821
9YPZ|1|5|U|3822
9YPZ|1|5|G|3823
9YPZ|1|5|A|3824
9YPZ|1|5|A|3825
9YPZ|1|5|C|3826
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Ribosomal protein L8
- Chain n
- eL41
- Chain p
- eL43
Coloring options: