J4_9YPZ_010

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

9YPZ|1|5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|C|4231
9YPZ|1|5|U|4232
9YPZ|1|5|A|4233
9YPZ|1|5|A|4234
9YPZ|1|5|G|4235
*
9YPZ|1|5|U|4289
9YPZ|1|5|U|4290
9YPZ|1|5|G|4291
*
9YPZ|1|5|C|4318
9YPZ|1|5|C|4319
*
9YPZ|1|5|G|4328
9YPZ|1|5|G|4329
9YPZ|1|5|G|4330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18

Chain T

eL21

Chain o

Large ribosomal subunit protein eL42