J4_9YQ0_003

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YQ0|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ0|1|5|C|111
9YQ0|1|5|C|112
*
9YQ0|1|5|G|278
9YQ0|1|5|A|279
9YQ0|1|5|G|280
9YQ0|1|5|U|281
9YQ0|1|5|C|282
9YQ0|1|5|G|283
*
9YQ0|1|5|C|304
9YQ0|1|5|A|305
9YQ0|1|5|A|306
9YQ0|1|5|A|307
9YQ0|1|5|G|308
9YQ0|1|5|C|309
9YQ0|1|5|G|310
*
9YQ0|1|5|U|327
9YQ0|1|5|A|328
9YQ0|1|5|A|329
9YQ0|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36