J4_9YQ1_003

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9YQ1|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|C|111
9YQ1|1|5|C|112
*
9YQ1|1|5|G|278
9YQ1|1|5|A|279
9YQ1|1|5|G|280
9YQ1|1|5|U|281
9YQ1|1|5|C|282
9YQ1|1|5|G|283
*
9YQ1|1|5|C|304
9YQ1|1|5|A|305
9YQ1|1|5|A|306
9YQ1|1|5|A|307
9YQ1|1|5|G|308
9YQ1|1|5|C|309
9YQ1|1|5|G|310
*
9YQ1|1|5|U|327
9YQ1|1|5|A|328
9YQ1|1|5|A|329
9YQ1|1|5|G|330

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36