J4_9YQ1_007

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9YQ1|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|G|2618
9YQ1|1|5|G|2619
*
9YQ1|1|5|U|2637
9YQ1|1|5|G|2638
9YQ1|1|5|U|2639
9YQ1|1|5|G|2640
9YQ1|1|5|A|2641
9YQ1|1|5|A|2642
*
9YQ1|1|5|U|2692
9YQ1|1|5|G|2693
9YQ1|1|5|G|2694
9YQ1|1|5|A|2695
9YQ1|1|5|A|2696
9YQ1|1|5|A|2697
9YQ1|1|5|G|2698
*
9YQ1|1|5|U|2718
9YQ1|1|5|C|2719

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

eL22

Chain g

Large ribosomal subunit protein eL34

Chain k

eL38