J4_9YQ1_008

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|G|3634
9YQ1|1|5|A|3635
9YQ1|1|5|C|3636
9YQ1|1|5|U|3637
9YQ1|1|5|G|3638
*
9YQ1|1|5|C|3650
9YQ1|1|5|A|3651
9YQ1|1|5|A|3652
9YQ1|1|5|A|3653
9YQ1|1|5|G|3654
*
9YQ1|1|5|U|3690
9YQ1|1|5|G|3691
9YQ1|1|5|A|3692
9YQ1|1|5|U|3693
9YQ1|1|5|U|3694
*
9YQ1|1|5|A|3821
9YQ1|1|5|U|3822
9YQ1|1|5|G|3823
9YQ1|1|5|A|3824
9YQ1|1|5|A|3825
9YQ1|1|5|C|3826

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain n

eL41

Chain p

eL43