J4_9YQ1_009

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9YQ1|1|5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|C|3696
9YQ1|1|5|U|3697
9YQ1|1|5|G|3698
*
9YQ1|1|5|C|3752
9YQ1|1|5|G|3753
*
9YQ1|1|5|C|3771
9YQ1|1|5|U|3772
9YQ1|1|5|U|3773
9YQ1|1|5|A|3774
9YQ1|1|5|A|3775
9YQ1|1|5|G|3776
9YQ1|1|5|G|3777
9YQ1|1|5|U|3778
9YQ1|1|5|A|3779
9YQ1|1|5|G|3780
*
9YQ1|1|5|U|3814
9YQ1|1|5|G|3815
9YQ1|1|5|A|3816
9YQ1|1|5|A|3817
9YQ1|1|5|U|3818
9YQ1|1|5|G|3819

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain n

eL41