J5_10PX_010

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

10PX|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

10PX|1|2A|C|47
10PX|1|2A|G|48
10PX|1|2A|A|49
10PX|1|2A|U|50
10PX|1|2A|G|51
10PX|1|2A|A|52
10PX|1|2A|A|53
10PX|1|2A|G|54
*
10PX|1|2A|C|116
10PX|1|2A|G|117
10PX|1|2A|A|118
10PX|1|2A|A|119
10PX|1|2A|U|120
10PX|1|2A|G|121
*
10PX|1|2A|C|130
10PX|1|2A|G|131
*
10PX|1|2A|C|148
10PX|1|2A|A|149
10PX|1|2A|C|150
*
10PX|1|2A|G|176
10PX|1|2A|G|177
10PX|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23