J5_10QM_003
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 10QM|1|I|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_10QM_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0846
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
10QM|1|I|C|584
10QM|1|I|G|585
10QM|1|I|A|586
10QM|1|I|C|587
10QM|1|I|U|588
10QM|1|I|U|589
*
10QM|1|I|A|668
10QM|1|I|G|669
10QM|1|I|A|670
10QM|1|I|C|671
*
10QM|1|I|G|809
10QM|1|I|U|810
10QM|1|I|U|811
10QM|1|I|C|812
*
10QM|1|I|G|1195
10QM|1|I|C|1196
*
10QM|1|I|G|1250
10QM|1|I|C|1251
10QM|1|I|G|1252
10QM|1|I|A|1253
10QM|1|I|A|1254
10QM|1|I|U|1255
10QM|1|I|G|1256
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain M
- Large ribosomal subunit protein uL4
- Chain T
- Large ribosomal subunit protein uL15
- Chain Y
- 50S ribosomal protein L20
- Chain Z
- Ribosomal protein L21
- Chain l
- Large ribosomal subunit protein bL35
Coloring options: