J5_10QM_005
3D structure
- PDB id
- 10QM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli 50S ribosomal subunit bound to compound 48a
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 10QM|1|I|A|2448, 10QM|1|I|H2U|2449, 10QM|1|I|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
10QM|1|I|G|2057
10QM|1|I|A|2058
10QM|1|I|A|2059
10QM|1|I|A|2060
10QM|1|I|G|2061
10QM|1|I|A|2062
10QM|1|I|C|2063
10QM|1|I|C|2064
*
10QM|1|I|G|2446
10QM|1|I|G|2447
10QM|1|I|A|2448
10QM|1|I|H2U|2449
10QM|1|I|A|2450
10QM|1|I|A|2451
10QM|1|I|C|2452
10QM|1|I|A|2453
*
10QM|1|I|U|2500
10QM|1|I|C|2501
10QM|1|I|G|2502
10QM|1|I|2MA|2503
10QM|1|I|PSU|2504
10QM|1|I|G|2505
10QM|1|I|U|2506
10QM|1|I|C|2507
*
10QM|1|I|G|2582
10QM|1|I|G|2583
10QM|1|I|U|2584
10QM|1|I|U|2585
10QM|1|I|U|2586
10QM|1|I|A|2587
10QM|1|I|G|2588
*
10QM|1|I|C|2606
10QM|1|I|G|2607
10QM|1|I|G|2608
10QM|1|I|U|2609
10QM|1|I|C|2610
10QM|1|I|C|2611
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L3
- Chain M
- Large ribosomal subunit protein uL4
- Chain T
- Large ribosomal subunit protein uL15
- Chain U
- 50S ribosomal protein L16
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
Coloring options: