J5_11BQ_001

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGC*GCGUG*CUUUC*GAAG*CAAG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11BQ|1|A|C|36
11BQ|1|A|U|37
11BQ|1|A|G|38
11BQ|1|A|G|39
11BQ|1|A|C|40
*
11BQ|1|A|G|402
11BQ|1|A|C|403
11BQ|1|A|G|404
11BQ|1|A|U|405
11BQ|1|A|G|406
*
11BQ|1|A|C|436
11BQ|1|A|U|437
11BQ|1|A|U|438
11BQ|1|A|U|439
11BQ|1|A|C|440
*
11BQ|1|A|G|497
11BQ|1|A|A|498
11BQ|1|A|A|499
11BQ|1|A|G|500
*
11BQ|1|A|C|545
11BQ|1|A|A|546
11BQ|1|A|A|547
11BQ|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12