J5_11DG_001
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGG*CGUAUA*UACUUUC*GAAG*CAAG
- Length
- 25 nucleotides
- Bulged bases
- 11DG|1|A|A|547
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11DG|1|A|C|36
11DG|1|A|U|37
11DG|1|A|G|38
11DG|1|A|G|39
*
11DG|1|A|C|403
11DG|1|A|G|404
11DG|1|A|U|405
11DG|1|A|A|406
11DG|1|A|U|407
11DG|1|A|A|408
*
11DG|1|A|U|434
11DG|1|A|A|435
11DG|1|A|C|436
11DG|1|A|U|437
11DG|1|A|U|438
11DG|1|A|U|439
11DG|1|A|C|440
*
11DG|1|A|G|497
11DG|1|A|A|498
11DG|1|A|A|499
11DG|1|A|G|500
*
11DG|1|A|C|545
11DG|1|A|A|546
11DG|1|A|A|547
11DG|1|A|G|548
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain L
- 30S ribosomal protein S12
Coloring options: