J5_11FV_001

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUUAG*CAGAAUAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11FV|1|C|C|36
11FV|1|C|U|37
11FV|1|C|G|38
11FV|1|C|G|39
*
11FV|1|C|C|397
11FV|1|C|G|398
11FV|1|C|U|399
11FV|1|C|G|400
*
11FV|1|C|C|430
11FV|1|C|U|431
11FV|1|C|U|432
11FV|1|C|U|433
11FV|1|C|U|434
11FV|1|C|A|435
11FV|1|C|G|436
*
11FV|1|C|C|486
11FV|1|C|A|487
11FV|1|C|G|488
11FV|1|C|A|489
11FV|1|C|A|490
11FV|1|C|U|491
11FV|1|C|A|492
11FV|1|C|A|493
11FV|1|C|G|494
*
11FV|1|C|C|539
11FV|1|C|A|540
11FV|1|C|A|541
11FV|1|C|G|542

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS4

Chain t

30S ribosomal protein S12