J5_11HG_005

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCUCGACUU*AUGCCGACGGG*UG*CCGAU*ACGACC

Length

36 nucleotides

Bulged bases

11HG|1|18|C|127, 11HG|1|18|C|142, 11HG|1|18|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HG|1|18|G|123
11HG|1|18|U|124
11HG|1|18|C|125
11HG|1|18|G|126
11HG|1|18|C|127
11HG|1|18|U|128
11HG|1|18|C|129
11HG|1|18|G|130
11HG|1|18|A|141
11HG|1|18|C|142
11HG|1|18|U|143
11HG|1|18|U|144
*
11HG|1|18|A|175
11HG|1|18|U|176
11HG|1|18|G|177
11HG|1|18|C|178
11HG|1|18|C|179
11HG|1|18|G|180
11HG|1|18|A|181
11HG|1|18|C|182
11HG|1|18|G|183
11HG|1|18|G|184
11HG|1|18|G|185
*
11HG|1|18|U|214
11HG|1|18|G|215
*
11HG|1|18|C|310
11HG|1|18|C|311
11HG|1|18|G|312
11HG|1|18|A|313
11HG|1|18|U|314
*
11HG|1|18|A|336
11HG|1|18|C|337
11HG|1|18|G|338
11HG|1|18|A|339
11HG|1|18|C|340
11HG|1|18|C|341

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8