J5_11HG_006
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCUUG*CU*GUU*AUGGAAUAGG*CAUGAU
- Length
- 27 nucleotides
- Bulged bases
- 11HG|1|18|C|687, 11HG|1|18|U|688, 11HG|1|18|U|871, 11HG|1|18|G|873, 11HG|1|18|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11HG|1|18|A|685
11HG|1|18|U|686
11HG|1|18|C|687
11HG|1|18|U|688
11HG|1|18|U|689
11HG|1|18|G|690
*
11HG|1|18|C|736
11HG|1|18|U|743
*
11HG|1|18|G|798
11HG|1|18|U|799
11HG|1|18|U|800
*
11HG|1|18|A|865
11HG|1|18|U|866
11HG|1|18|G|867
11HG|1|18|G|868
11HG|1|18|A|869
11HG|1|18|A|870
11HG|1|18|U|871
11HG|1|18|A|872
11HG|1|18|G|873
11HG|1|18|G|874
*
11HG|1|18|C|912
11HG|1|18|A|913
11HG|1|18|U|914
11HG|1|18|G|915
11HG|1|18|A|916
11HG|1|18|U|917
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 19
- 60S ribosomal protein L19
- Chain DD
- Small ribosomal subunit protein uS17
- Chain FF
- 40S ribosomal protein S13
- Chain RR
- uS12
- Chain S7
- Small ribosomal subunit protein eS7
- Chain WX
- 40S ribosomal protein S15a
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