J5_11HG_009
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 11HG|1|28|G|3620, 11HG|1|28|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_11HG_009 not in the Motif Atlas
- Homologous match to J5_8GLP_003
- Geometric discrepancy: 0.0539
- The information below is about J5_8GLP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.4
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
11HG|1|28|G|2855
11HG|1|28|C|2856
11HG|1|28|A|2857
11HG|1|28|A|2858
11HG|1|28|G|2859
11HG|1|28|C|2860
11HG|1|28|C|2861
11HG|1|28|G|2862
11HG|1|28|G|2863
*
11HG|1|28|U|2887
11HG|1|28|G|2888
*
11HG|1|28|U|3613
11HG|1|28|G|3614
*
11HG|1|28|C|3618
11HG|1|28|G|3619
11HG|1|28|G|3620
11HG|1|28|A|3621
11HG|1|28|C|3622
11HG|1|28|C|3623
11HG|1|28|A|3624
11HG|1|28|G|3625
11HG|1|28|G|3626
*
11HG|1|28|C|3835
11HG|1|28|A|3836
11HG|1|28|C|3837
Current chains
- Chain 28
- 28s rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain 19
- 60S ribosomal protein L19
- Chain 23
- Ribosomal protein L23
- Chain L3
- 60S ribosomal protein L3
- Chain W
- Ribosomal protein L24
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