J5_11KH_002

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

39 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|18|C|30
11KH|1|18|U|31
11KH|1|18|U|32
11KH|1|18|G|33
11KH|1|18|U|34
11KH|1|18|C|35
11KH|1|18|U|36
*
11KH|1|18|A|519
11KH|1|18|A|520
11KH|1|18|A|521
11KH|1|18|A|522
11KH|1|18|A|523
11KH|1|18|U|524
11KH|1|18|A|525
11KH|1|18|A|526
11KH|1|18|C|527
*
11KH|1|18|G|558
11KH|1|18|G|559
11KH|1|18|A|560
11KH|1|18|A|561
11KH|1|18|U|562
11KH|1|18|G|563
11KH|1|18|A|564
11KH|1|18|G|565
*
11KH|1|18|C|585
11KH|1|18|G|586
11KH|1|18|A|587
11KH|1|18|G|588
11KH|1|18|G|589
11KH|1|18|A|590
11KH|1|18|U|591
11KH|1|18|C|592
11KH|1|18|C|593
11KH|1|18|A|594
11KH|1|18|U|595
*
11KH|1|18|A|641
11KH|1|18|U|642
11KH|1|18|A|643
11KH|1|18|G|644

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S9

40S ribosomal protein S9

Chain YY

40S ribosomal protein S30