J5_11KH_003
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 11KH|1|18|U|55, 11KH|1|18|A|92, 11KH|1|18|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11KH|1|18|C|53
11KH|1|18|A|54
11KH|1|18|U|55
11KH|1|18|G|56
*
11KH|1|18|C|89
11KH|1|18|G|90
11KH|1|18|A|91
11KH|1|18|A|92
11KH|1|18|U|93
11KH|1|18|G|94
11KH|1|18|G|95
11KH|1|18|C|96
*
11KH|1|18|G|434
11KH|1|18|A|435
11KH|1|18|G|436
*
11KH|1|18|C|457
11KH|1|18|A|458
11KH|1|18|C|459
11KH|1|18|A|460
11KH|1|18|U|461
*
11KH|1|18|A|468
11KH|1|18|A|469
11KH|1|18|G|470
11KH|1|18|G|471
11KH|1|18|C|472
11KH|1|18|A|473
11KH|1|18|G|474
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 23
- 60S ribosomal protein L23
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
- Chain S9
- 40S ribosomal protein S9
- Chain SS
- 40S ribosomal protein S24
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