J5_11KH_004

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

11KH|1|18|G|126, 11KH|1|18|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|18|G|123
11KH|1|18|U|124
11KH|1|18|C|125
11KH|1|18|G|126
11KH|1|18|C|127
11KH|1|18|U|128
11KH|1|18|C|129
11KH|1|18|G|130
*
11KH|1|18|C|182
11KH|1|18|G|183
11KH|1|18|G|184
11KH|1|18|G|185
*
11KH|1|18|U|214
11KH|1|18|G|215
*
11KH|1|18|C|310
11KH|1|18|C|311
11KH|1|18|G|312
*
11KH|1|18|C|337
11KH|1|18|G|338
11KH|1|18|A|339
11KH|1|18|C|340
11KH|1|18|C|341

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8