J5_11KH_007

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

11KH|1|28|G|3620, 11KH|1|28|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_11KH_007 not in the Motif Atlas

Homologous match to J5_8GLP_003

Geometric discrepancy: 0.0631

The information below is about J5_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.4

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

12

Unit IDs

11KH|1|28|G|2855
11KH|1|28|C|2856
11KH|1|28|A|2857
11KH|1|28|A|2858
11KH|1|28|G|2859
11KH|1|28|C|2860
11KH|1|28|C|2861
11KH|1|28|G|2862
11KH|1|28|G|2863
*
11KH|1|28|U|2887
11KH|1|28|G|2888
*
11KH|1|28|U|3613
11KH|1|28|G|3614
*
11KH|1|28|C|3618
11KH|1|28|G|3619
11KH|1|28|G|3620
11KH|1|28|A|3621
11KH|1|28|C|3622
11KH|1|28|C|3623
11KH|1|28|A|3624
11KH|1|28|G|3625
11KH|1|28|G|3626
*
11KH|1|28|C|3835
11KH|1|28|A|3836
11KH|1|28|C|3837

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 19

60S ribosomal protein L19

Chain 23

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3

Chain W

eL24