J5_12DP_014

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

12DP|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DP|1|2A|C|601
12DP|1|2A|G|602
12DP|1|2A|A|603
12DP|1|2A|G|604
*
12DP|1|2A|C|624
12DP|1|2A|G|625
12DP|1|2A|U|626
12DP|1|2A|A|627
12DP|1|2A|G|628
*
12DP|1|2A|C|635
12DP|1|2A|G|636
12DP|1|2A|A|637
12DP|1|2A|G|638
*
12DP|1|2A|C|650
12DP|1|2A|G|651
12DP|1|2A|C|652
12DP|1|2A|A|652|||A
12DP|1|2A|A|652|||B
12DP|1|2A|G|652|||C
*
12DP|1|2A|C|652|||V
12DP|1|2A|A|653
12DP|1|2A|A|654
12DP|1|2A|A|655
12DP|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15