Loop J5_12DP

3D structure

PDB id: 12DP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 12DP|1|2A|A|2062, 12DP|1|2A|A|2448, 12DP|1|2A|U|2449, 12DP|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

12DP|1|2A|A|2057
12DP|1|2A|A|2058
12DP|1|2A|A|2059
12DP|1|2A|A|2060
12DP|1|2A|G|2061
12DP|1|2A|A|2062
12DP|1|2A|C|2063
12DP|1|2A|C|2064
*
12DP|1|2A|G|2446
12DP|1|2A|G|2447
12DP|1|2A|A|2448
12DP|1|2A|U|2449
12DP|1|2A|A|2450
12DP|1|2A|A|2451
12DP|1|2A|C|2452
12DP|1|2A|A|2453
*
12DP|1|2A|U|2500
12DP|1|2A|C|2501
12DP|1|2A|G|2502
12DP|1|2A|2MA|2503
12DP|1|2A|U|2504
12DP|1|2A|G|2505
12DP|1|2A|U|2506
12DP|1|2A|C|2507
*
12DP|1|2A|G|2582
12DP|1|2A|G|2583
12DP|1|2A|U|2584
12DP|1|2A|U|2585
12DP|1|2A|C|2586
12DP|1|2A|A|2587
12DP|1|2A|G|2588
*
12DP|1|2A|C|2606
12DP|1|2A|G|2607
12DP|1|2A|G|2608
12DP|1|2A|U|2609
12DP|1|2A|C|2610
12DP|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S ribosomal protein L27
Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16
Chain 2x: Transfer RNA; tRNA

J5_12DP_016