J5_12DQ_002
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 12DQ|1|1A|U|272|||A, 12DQ|1|1A|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
12DQ|1|1A|C|268
12DQ|1|1A|U|269
12DQ|1|1A|A|270
12DQ|1|1A|A|271
12DQ|1|1A|A|271|||A
12DQ|1|1A|C|271|||B
*
12DQ|1|1A|G|271|||V
12DQ|1|1A|G|271|||W
12DQ|1|1A|G|271|||X
12DQ|1|1A|U|271|||Y
12DQ|1|1A|C|271|||Z
12DQ|1|1A|G|272
12DQ|1|1A|U|272|||A
12DQ|1|1A|G|272|||B
*
12DQ|1|1A|C|366
12DQ|1|1A|G|370
12DQ|1|1A|A|371
12DQ|1|1A|G|372
12DQ|1|1A|U|373
12DQ|1|1A|A|374
12DQ|1|1A|C|375
*
12DQ|1|1A|G|399
12DQ|1|1A|G|400
12DQ|1|1A|A|401
12DQ|1|1A|A|402
12DQ|1|1A|U|403
12DQ|1|1A|C|404
12DQ|1|1A|U|405
12DQ|1|1A|G|406
*
12DQ|1|1A|U|421
12DQ|1|1A|A|422
12DQ|1|1A|A|423
12DQ|1|1A|G|424
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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