Loop J5_12DQ

3D structure

PDB id: 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 12DQ|1|1A|A|2448, 12DQ|1|1A|U|2449, 12DQ|1|1A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

12DQ|1|1A|A|2057
12DQ|1|1A|A|2058
12DQ|1|1A|A|2059
12DQ|1|1A|A|2060
12DQ|1|1A|G|2061
12DQ|1|1A|A|2062
12DQ|1|1A|C|2063
12DQ|1|1A|C|2064
*
12DQ|1|1A|G|2446
12DQ|1|1A|G|2447
12DQ|1|1A|A|2448
12DQ|1|1A|U|2449
12DQ|1|1A|A|2450
12DQ|1|1A|A|2451
12DQ|1|1A|C|2452
12DQ|1|1A|A|2453
*
12DQ|1|1A|U|2500
12DQ|1|1A|C|2501
12DQ|1|1A|G|2502
12DQ|1|1A|2MA|2503
12DQ|1|1A|U|2504
12DQ|1|1A|G|2505
12DQ|1|1A|U|2506
12DQ|1|1A|C|2507
*
12DQ|1|1A|G|2582
12DQ|1|1A|G|2583
12DQ|1|1A|U|2584
12DQ|1|1A|U|2585
12DQ|1|1A|C|2586
12DQ|1|1A|A|2587
12DQ|1|1A|G|2588
*
12DQ|1|1A|C|2606
12DQ|1|1A|G|2607
12DQ|1|1A|G|2608
12DQ|1|1A|U|2609
12DQ|1|1A|C|2610
12DQ|1|1A|U|2611

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 10: 50S ribosomal protein L27
Chain 15: 50S ribosomal protein L32
Chain 1D: 50S ribosomal protein L2
Chain 1E: 50S ribosomal protein L3
Chain 1F: 50S ribosomal protein L4
Chain 1P: 50S ribosomal protein L15
Chain 1Q: 50S ribosomal protein L16
Chain 1W: 50S ribosomal protein L22
Chain 1v: P-site Peptidyl-tRNA Analog Peptide
Chain 1x: P-site Peptidyl-tRNA Analog RNA

J5_12DQ_006