J5_12DQ_008
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
12DQ|1|1a|C|36
12DQ|1|1a|U|37
12DQ|1|1a|G|38
12DQ|1|1a|G|39
*
12DQ|1|1a|C|403
12DQ|1|1a|U|404
12DQ|1|1a|U|405
12DQ|1|1a|G|406
*
12DQ|1|1a|C|436
12DQ|1|1a|U|437
12DQ|1|1a|G|438
12DQ|1|1a|A|439
12DQ|1|1a|A|441
12DQ|1|1a|C|442
*
12DQ|1|1a|G|492
12DQ|1|1a|G|493
12DQ|1|1a|U|494
12DQ|1|1a|A|495
12DQ|1|1a|A|496
12DQ|1|1a|U|498
12DQ|1|1a|A|499
12DQ|1|1a|G|500
*
12DQ|1|1a|C|545
12DQ|1|1a|G|546
12DQ|1|1a|A|547
12DQ|1|1a|G|548
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
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