J5_12DQ_014

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

12DQ|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|2A|C|601
12DQ|1|2A|G|602
12DQ|1|2A|A|603
12DQ|1|2A|G|604
*
12DQ|1|2A|C|624
12DQ|1|2A|G|625
12DQ|1|2A|U|626
12DQ|1|2A|A|627
12DQ|1|2A|G|628
*
12DQ|1|2A|C|635
12DQ|1|2A|G|636
12DQ|1|2A|A|637
12DQ|1|2A|G|638
*
12DQ|1|2A|C|650
12DQ|1|2A|G|651
12DQ|1|2A|C|652
12DQ|1|2A|A|652|||A
12DQ|1|2A|A|652|||B
12DQ|1|2A|G|652|||C
*
12DQ|1|2A|C|652|||V
12DQ|1|2A|A|653
12DQ|1|2A|A|654
12DQ|1|2A|A|655
12DQ|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15