J5_1FFK_007

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

1FFK|1|0|A|2483, 1FFK|1|0|U|2539, 1FFK|1|0|C|2644, 1FFK|1|0|U|2645

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1FFK|1|0|C|2098
1FFK|1|0|G|2099
1FFK|1|0|A|2100
1FFK|1|0|A|2101
1FFK|1|0|G|2102
1FFK|1|0|A|2103
1FFK|1|0|C|2104
1FFK|1|0|C|2105
*
1FFK|1|0|G|2481
1FFK|1|0|G|2482
1FFK|1|0|A|2483
1FFK|1|0|U|2484
1FFK|1|0|A|2485
1FFK|1|0|A|2486
1FFK|1|0|C|2487
1FFK|1|0|A|2488
1FFK|1|0|G|2489
*
1FFK|1|0|C|2533
1FFK|1|0|C|2534
1FFK|1|0|U|2535
1FFK|1|0|C|2536
1FFK|1|0|G|2537
1FFK|1|0|A|2538
1FFK|1|0|U|2539
1FFK|1|0|G|2540
1FFK|1|0|U|2541
*
1FFK|1|0|G|2618
1FFK|1|0|U|2619
1FFK|1|0|U|2620
1FFK|1|0|U|2621
1FFK|1|0|A|2622
1FFK|1|0|G|2623
*
1FFK|1|0|C|2641
1FFK|1|0|G|2642
1FFK|1|0|G|2643
1FFK|1|0|C|2644
1FFK|1|0|U|2645
1FFK|1|0|G|2646

Current chains

Chain 0

23S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN L4