J5_1FFZ_001

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAGACCC*GGGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

40 nucleotides

Bulged bases

1FFZ|1|A|A|2483, 1FFZ|1|A|U|2539, 1FFZ|1|A|G|2540, 1FFZ|1|A|C|2644, 1FFZ|1|A|U|2645

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1FFZ|1|A|C|2098
1FFZ|1|A|G|2099
1FFZ|1|A|A|2100
1FFZ|1|A|A|2101
1FFZ|1|A|G|2102
1FFZ|1|A|A|2103
1FFZ|1|A|C|2104
1FFZ|1|A|C|2105
1FFZ|1|A|C|2106
*
1FFZ|1|A|G|2480
1FFZ|1|A|G|2481
1FFZ|1|A|G|2482
1FFZ|1|A|A|2483
1FFZ|1|A|U|2484
1FFZ|1|A|A|2485
1FFZ|1|A|A|2486
1FFZ|1|A|C|2487
1FFZ|1|A|A|2488
1FFZ|1|A|G|2489
*
1FFZ|1|A|C|2533
1FFZ|1|A|C|2534
1FFZ|1|A|U|2535
1FFZ|1|A|C|2536
1FFZ|1|A|G|2537
1FFZ|1|A|A|2538
1FFZ|1|A|U|2539
1FFZ|1|A|G|2540
1FFZ|1|A|U|2541
*
1FFZ|1|A|G|2618
1FFZ|1|A|U|2619
1FFZ|1|A|U|2620
1FFZ|1|A|U|2621
1FFZ|1|A|A|2622
1FFZ|1|A|G|2623
*
1FFZ|1|A|C|2641
1FFZ|1|A|G|2642
1FFZ|1|A|G|2643
1FFZ|1|A|C|2644
1FFZ|1|A|U|2645
1FFZ|1|A|G|2646

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

R(P*CP*C*)-D(P*A)-R(P*(PU))