J5_1FG0_003

3D structure

PDB id

1FG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGCUG

Length

38 nucleotides

Bulged bases

1FG0|1|A|A|2483, 1FG0|1|A|U|2484, 1FG0|1|A|U|2539, 1FG0|1|A|C|2644, 1FG0|1|A|U|2645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1FG0|1|A|C|2098
1FG0|1|A|G|2099
1FG0|1|A|A|2100
1FG0|1|A|A|2101
1FG0|1|A|G|2102
1FG0|1|A|A|2103
1FG0|1|A|C|2104
1FG0|1|A|C|2105
*
1FG0|1|A|G|2481
1FG0|1|A|G|2482
1FG0|1|A|A|2483
1FG0|1|A|U|2484
1FG0|1|A|A|2485
1FG0|1|A|A|2486
1FG0|1|A|C|2487
1FG0|1|A|A|2488
1FG0|1|A|G|2489
*
1FG0|1|A|C|2533
1FG0|1|A|C|2534
1FG0|1|A|U|2535
1FG0|1|A|C|2536
1FG0|1|A|G|2537
1FG0|1|A|A|2538
1FG0|1|A|U|2539
1FG0|1|A|G|2540
1FG0|1|A|U|2541
*
1FG0|1|A|G|2618
1FG0|1|A|U|2619
1FG0|1|A|U|2620
1FG0|1|A|U|2621
1FG0|1|A|A|2622
1FG0|1|A|G|2623
*
1FG0|1|A|C|2641
1FG0|1|A|G|2642
1FG0|1|A|G|2643
1FG0|1|A|C|2644
1FG0|1|A|U|2645
1FG0|1|A|G|2646

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

5'-R(CCGGCGGGCUGGUUCAAACCGGCCCGCCGGACC)-3'-5'-R(P-PUROMYCIN)-3'