J5_1FKA_003

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

1FKA|1|A|A|61, 1FKA|1|A|G|101, 1FKA|1|A|G|102, 1FKA|1|A|A|103, 1FKA|1|A|C|104, 1FKA|1|A|G|105, 1FKA|1|A|A|311, 1FKA|1|A|G|347, 1FKA|1|A|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1FKA|1|A|C|59
1FKA|1|A|A|60
1FKA|1|A|A|61
1FKA|1|A|G|62
*
1FKA|1|A|C|100
1FKA|1|A|G|101
1FKA|1|A|G|102
1FKA|1|A|A|103
1FKA|1|A|C|104
1FKA|1|A|G|105
1FKA|1|A|G|106
1FKA|1|A|G|107
*
1FKA|1|A|C|310
1FKA|1|A|A|311
1FKA|1|A|G|312
*
1FKA|1|A|C|333
1FKA|1|A|A|334
1FKA|1|A|C|335
*
1FKA|1|A|G|346
1FKA|1|A|G|347
1FKA|1|A|C|348
1FKA|1|A|A|349
1FKA|1|A|G|350

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20