J5_1FKA_004
3D structure
- PDB id
- 1FKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGGGCCCGCACAAGCGGUGGA*UACAAUG*CCCAGUUCGGAUU*AUGAAGCCGGAAUCGCUAGUAA*UGAAUACGUUCCCGGGCCUU
- Length
- 84 nucleotides
- Bulged bases
- 1FKA|1|A|G|904, 1FKA|1|A|C|912, 1FKA|1|A|A|913, 1FKA|1|A|C|914, 1FKA|1|A|A|915, 1FKA|1|A|G|922, 1FKA|1|A|C|1217, 1FKA|1|A|A|1218, 1FKA|1|A|A|1219, 1FKA|1|A|C|1276, 1FKA|1|A|A|1277, 1FKA|1|A|G|1278, 1FKA|1|A|U|1279, 1FKA|1|A|U|1280, 1FKA|1|A|C|1281, 1FKA|1|A|G|1309, 1FKA|1|A|A|1310, 1FKA|1|A|A|1311, 1FKA|1|A|G|1312, 1FKA|1|A|C|1313, 1FKA|1|A|C|1314, 1FKA|1|A|G|1316, 1FKA|1|A|A|1317, 1FKA|1|A|A|1324, 1FKA|1|A|G|1325, 1FKA|1|A|C|1357, 1FKA|1|A|G|1358, 1FKA|1|A|U|1359, 1FKA|1|A|U|1360, 1FKA|1|A|C|1361, 1FKA|1|A|C|1362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1FKA|1|A|G|903
1FKA|1|A|G|904
1FKA|1|A|G|905
1FKA|1|A|G|906
1FKA|1|A|G|907
1FKA|1|A|C|908
1FKA|1|A|C|909
1FKA|1|A|C|910
1FKA|1|A|G|911
1FKA|1|A|C|912
1FKA|1|A|A|913
1FKA|1|A|C|914
1FKA|1|A|A|915
1FKA|1|A|A|916
1FKA|1|A|G|917
1FKA|1|A|C|918
1FKA|1|A|G|919
1FKA|1|A|G|920
1FKA|1|A|U|921
1FKA|1|A|G|922
1FKA|1|A|G|923
1FKA|1|A|A|924
*
1FKA|1|A|U|1215
1FKA|1|A|A|1216
1FKA|1|A|C|1217
1FKA|1|A|A|1218
1FKA|1|A|A|1219
1FKA|1|A|U|1220
1FKA|1|A|G|1221
*
1FKA|1|A|C|1274
1FKA|1|A|C|1275
1FKA|1|A|C|1276
1FKA|1|A|A|1277
1FKA|1|A|G|1278
1FKA|1|A|U|1279
1FKA|1|A|U|1280
1FKA|1|A|C|1281
1FKA|1|A|G|1282
1FKA|1|A|G|1283
1FKA|1|A|A|1284
1FKA|1|A|U|1285
1FKA|1|A|U|1286
*
1FKA|1|A|A|1307
1FKA|1|A|U|1308
1FKA|1|A|G|1309
1FKA|1|A|A|1310
1FKA|1|A|A|1311
1FKA|1|A|G|1312
1FKA|1|A|C|1313
1FKA|1|A|C|1314
1FKA|1|A|G|1315
1FKA|1|A|G|1316
1FKA|1|A|A|1317
1FKA|1|A|A|1318
1FKA|1|A|U|1319
1FKA|1|A|C|1320
1FKA|1|A|G|1321
1FKA|1|A|C|1322
1FKA|1|A|U|1323
1FKA|1|A|A|1324
1FKA|1|A|G|1325
1FKA|1|A|U|1326
1FKA|1|A|A|1327
1FKA|1|A|A|1328
*
1FKA|1|A|U|1351
1FKA|1|A|G|1352
1FKA|1|A|A|1353
1FKA|1|A|A|1354
1FKA|1|A|U|1355
1FKA|1|A|A|1356
1FKA|1|A|C|1357
1FKA|1|A|G|1358
1FKA|1|A|U|1359
1FKA|1|A|U|1360
1FKA|1|A|C|1361
1FKA|1|A|C|1362
1FKA|1|A|C|1363
1FKA|1|A|G|1364
1FKA|1|A|G|1365
1FKA|1|A|G|1366
1FKA|1|A|C|1367
1FKA|1|A|C|1368
1FKA|1|A|U|1369
1FKA|1|A|U|1370
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain S
- 30S RIBOSOMAL PROTEIN S19
Coloring options: