J5_1I96_002

3D structure

PDB id

1I96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

1I96|1|A|A|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1I96|1|A|G|57
1I96|1|A|C|58
1I96|1|A|A|59
1I96|1|A|A|60
1I96|1|A|G|61
*
1I96|1|A|C|99
1I96|1|A|G|100
1I96|1|A|G|101
1I96|1|A|A|102
1I96|1|A|C|103
1I96|1|A|G|104
1I96|1|A|G|105
1I96|1|A|G|106
*
1I96|1|A|C|309
1I96|1|A|A|310
1I96|1|A|G|311
*
1I96|1|A|C|332
1I96|1|A|A|333
1I96|1|A|C|334
*
1I96|1|A|G|345
1I96|1|A|G|346
1I96|1|A|C|347
1I96|1|A|A|348
1I96|1|A|G|349
1I96|1|A|C|350

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20