J5_1JZX_002

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

1JZX|1|A|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_1JZX_002 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.1643

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.6

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

1JZX|1|A|C|593
1JZX|1|A|G|594
1JZX|1|A|A|595
1JZX|1|A|C|596
1JZX|1|A|U|597
1JZX|1|A|U|598
*
1JZX|1|A|A|681
1JZX|1|A|G|682
1JZX|1|A|A|683
1JZX|1|A|C|684
*
1JZX|1|A|G|822
1JZX|1|A|U|823
1JZX|1|A|U|824
1JZX|1|A|C|825
*
1JZX|1|A|G|1209
1JZX|1|A|C|1210
*
1JZX|1|A|G|1263
1JZX|1|A|C|1264
1JZX|1|A|G|1265
1JZX|1|A|G|1266
1JZX|1|A|A|1267
1JZX|1|A|U|1268
1JZX|1|A|G|1269

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Ribosomal Protein L4